A33s1 Supplemental
Import libraries¶
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import ee
import geemap
import ee
import geemap
Create an interactive map¶
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Map = geemap.Map(center=[40, -100], zoom=4)
Map = geemap.Map(center=[40, -100], zoom=4)
Add Earth Engine Python script¶
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# Add Earth Engine dataset
image = ee.Image("USGS/SRTMGL1_003")
#*** Start of imports. If edited, may not auto-convert in the playground. ***#
imageCollection = ee.ImageCollection("LANDSAT/MANGROVE_FORESTS"),
Mangrove =
# shown: False #
ee.FeatureCollection(
[ee.Feature(
ee.Geometry.Point([-13.661310159982044, 9.863979956913798]),
{
"landcover": 1,
"system:index": "0"
}),
ee.Feature(
ee.Geometry.Point([-13.662340128243763, 9.860766590107316]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.666974985421497, 9.860428339147328]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.671094858468372, 9.857891445884547]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.670579874337513, 9.852310212005683]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.671953165353138, 9.847405413374954]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.66165348273595, 9.847236281087548]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.661481821358997, 9.851295432063562]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.658563577950794, 9.848251073512062]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.659936868966419, 9.84317708019428]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.671609842599231, 9.844361018943362]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.680021250069935, 9.842500541860387]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.681222879708606, 9.84520668687933]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.686201059640247, 9.847067148713466]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.690149271310169, 9.849096731482412]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.690492594064075, 9.851802822424787]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.684999430001575, 9.854508891171829]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.682767832101185, 9.864318204228617]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.68139454108556, 9.870237476020813]),
{
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ee.Feature(
ee.Geometry.Point([-13.677789652169544, 9.864149080614622]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.67864795905431, 9.861950465733774]),
{
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ee.Feature(
ee.Geometry.Point([-13.651010477364856, 9.872943393406452]),
{
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ee.Feature(
ee.Geometry.Point([-13.655130350411731, 9.876833110681515]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.654443704903919, 9.884950633398141]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.648950540841419, 9.880553666792991]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.646375620187122, 9.87564928855102]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.638822519601185, 9.871083077592651]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.63744922858556, 9.868038901772325]),
{
"landcover": 1,
"system:index": "27"
}),
ee.Feature(
ee.Geometry.Point([-13.633157694161731, 9.86753153639998]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.633501016915638, 9.864149080614622]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.63470264655431, 9.860428339147328]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.626806223214466, 9.862288715131701]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.630239450753528, 9.866685925709453]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.868038901772325]),
{
"landcover": 1,
"system:index": "33"
}),
ee.Feature(
ee.Geometry.Point([-13.621828043282825, 9.867024170246147]),
{
"landcover": 1,
"system:index": "34"
}),
ee.Feature(
ee.Geometry.Point([-13.616678201974231, 9.865163820996548]),
{
"landcover": 1,
"system:index": "35"
}),
ee.Feature(
ee.Geometry.Point([-13.623029672921497, 9.862457839700498]),
{
"landcover": 1,
"system:index": "36"
}),
ee.Feature(
ee.Geometry.Point([-13.6204547522672, 9.865163820996548]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.618394815743763, 9.862119590476139]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.627321207345325, 9.861273965896487]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.630754434884388, 9.858567952663368]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.632814371407825, 9.854508891171829]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.630067789376575, 9.865163820996548]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.637792551339466, 9.866685925709453]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.645002329171497, 9.8715904374934]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.649637186349231, 9.872436035590608]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.654100382150013, 9.873281631515944]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.65289875251134, 9.879200742165947]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.653242075265247, 9.882921271500603]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.657876932442981, 9.882921271500603]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.648778879464466, 9.886134422054315]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.642255747140247, 9.880046320709882]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.6424274085172, 9.877171344793748]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.644830667794544, 9.88089189708034]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.646032297433216, 9.884443294097883]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.876325758861322]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.873281631515944]),
{
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ee.Feature(
ee.Geometry.Point([-13.618738138497669, 9.871928676992896]),
{
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ee.Feature(
ee.Geometry.Point([-13.616678201974231, 9.873281631515944]),
{
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ee.Feature(
ee.Geometry.Point([-13.613244974435169, 9.860766590107316]),
{
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ee.Feature(
ee.Geometry.Point([-13.61822315436681, 9.858906205532225]),
{
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ee.Feature(
ee.Geometry.Point([-13.621656381905872, 9.854339762525496]),
{
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ee.Feature(
ee.Geometry.Point([-13.62096973639806, 9.851464562270667]),
{
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ee.Feature(
ee.Geometry.Point([-13.618909799874622, 9.849773256298489]),
{
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ee.Feature(
ee.Geometry.Point([-13.614618265450794, 9.848420205279472]),
{
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ee.Feature(
ee.Geometry.Point([-13.609811746896106, 9.848420205279472]),
{
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ee.Feature(
ee.Geometry.Point([-13.603288614571888, 9.85044977972763]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.602945291817981, 9.853155859573075]),
{
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}),
ee.Feature(
ee.Geometry.Point([-13.609296762765247, 9.855185404889882]),
{
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ee.Feature(
ee.Geometry.Point([-13.614789926827747, 9.855185404889882]),
{
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ee.Feature(
ee.Geometry.Point([-13.613073313058216, 9.85501627659046]),
{
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ee.Feature(
ee.Geometry.Point([-13.605005228341419, 9.859075331836523]),
{
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ee.Feature(
ee.Geometry.Point([-13.6039752600797, 9.8631343371077]),
{
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ee.Feature(
ee.Geometry.Point([-13.602601969064075, 9.86059746467071]),
{
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ee.Feature(
ee.Geometry.Point([-13.598310434640247, 9.858398826098787]),
{
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ee.Feature(
ee.Geometry.Point([-13.594533884347278, 9.856200172865066]),
{
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ee.Feature(
ee.Geometry.Point([-13.592817270577747, 9.852479341692579]),
{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Point([-13.594190561593372, 9.848589336960218]),
{
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ee.Feature(
ee.Geometry.Point([-13.597108805001575, 9.84520668687933]),
{
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ee.Feature(
ee.Geometry.Point([-13.598653757394153, 9.841824002140536]),
{
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ee.Feature(
ee.Geometry.Point([-13.603288614571888, 9.840809189962322]),
{
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ee.Feature(
ee.Geometry.Point([-13.605691873849231, 9.84317708019428]),
{
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ee.Feature(
ee.Geometry.Point([-13.597108805001575, 9.840978325541894]),
{
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ee.Feature(
ee.Geometry.Point([-13.592302286446888, 9.845037553465422]),
{
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ee.Feature(
ee.Geometry.Point([-13.590585672677356, 9.851633692391072]),
{
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ee.Feature(
ee.Geometry.Point([-13.589899027169544, 9.856707555681723]),
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ee.Feature(
ee.Geometry.Point([-13.58474918586095, 9.85653842816291]),
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ee.Feature(
ee.Geometry.Point([-13.618394815743763, 9.84351534884146]),
{
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ee.Feature(
ee.Geometry.Point([-13.618738138497669, 9.841147461034842]),
{
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ee.Feature(
ee.Geometry.Point([-13.622343027413685, 9.839117829403516]),
{
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ee.Feature(
ee.Geometry.Point([-13.623544657052356, 9.843853617142127]),
{
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ee.Feature(
ee.Geometry.Point([-13.625776254952747, 9.846559751071275]),
{
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ee.Feature(
ee.Geometry.Point([-13.628351175607044, 9.850788040922096]),
{
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ee.Feature(
ee.Geometry.Point([-13.629381143868763, 9.853663247072985]),
{
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ee.Feature(
ee.Geometry.Point([-13.628007852853138, 9.857722318972954]),
{
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ee.Feature(
ee.Geometry.Point([-13.630754434884388, 9.852648471292772]),
{
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ee.Feature(
ee.Geometry.Point([-13.631784403146106, 9.848251073512062]),
{
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ee.Feature(
ee.Geometry.Point([-13.635389292062122, 9.851802822424787]),
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ee.Feature(
ee.Geometry.Point([-13.621656381905872, 9.862119590476139]),
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ee.Feature(
ee.Geometry.Point([-13.613244974435169, 9.846390618350565]),
{
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ee.Feature(
ee.Geometry.Point([-13.61221500617345, 9.841824002140536]),
{
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ee.Feature(
ee.Geometry.Point([-13.612043344796497, 9.838948692871343]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.63744922858556, 9.844868419964866]),
{
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ee.Feature(
ee.Geometry.Point([-13.657876932442981, 9.858737079141173]),
{
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ee.Feature(
ee.Geometry.Point([-13.662511789620716, 9.858567952663368]),
{
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ee.Feature(
ee.Geometry.Point([-13.706800424874622, 9.85535453310259]),
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ee.Feature(
ee.Geometry.Point([-13.70611377936681, 9.852986730233013]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.701135599435169, 9.85501627659046]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.337463117603749, 9.47123234301792]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.341582990650624, 9.498153381271607]),
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ee.Feature(
ee.Geometry.Point([-13.337978101734608, 9.505772159084684]),
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ee.Feature(
ee.Geometry.Point([-13.348621107105702, 9.512036360435498]),
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ee.Feature(
ee.Geometry.Point([-13.352740980152577, 9.512713564520134]),
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ee.Feature(
ee.Geometry.Point([-13.329910017017811, 9.432624908679694]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.205283857349842, 9.260532455463142]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.259185529713124, 9.244097935622158]),
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ee.Feature(
ee.Geometry.Point([-13.262103773121327, 9.239692676146335]),
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ee.Feature(
ee.Geometry.Point([-13.27600834465453, 9.234101305928146]),
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ee.Feature(
ee.Geometry.Point([-13.29025623894164, 9.216648883114125]),
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ee.Feature(
ee.Geometry.Point([-13.29025623894164, 9.206820925471753]),
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ee.Feature(
ee.Geometry.Point([-13.294891096119374, 9.20224574851503]),
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ee.Feature(
ee.Geometry.Point([-13.305877424244374, 9.201398487027035]),
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ee.Feature(
ee.Geometry.Point([-13.22382328606078, 9.209871010547175]),
{
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ee.Feature(
ee.Geometry.Point([-13.192065931324452, 9.215632210520651]),
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ee.Feature(
ee.Geometry.Point([-13.190177656177967, 9.218851663690847]),
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ee.Feature(
ee.Geometry.Point([-13.187774396900624, 9.212751622278716]),
{
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ee.Feature(
ee.Geometry.Point([-13.206313825611561, 9.193095217068748]),
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ee.Feature(
ee.Geometry.Point([-13.19034931755492, 9.189536613174072]),
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ee.Feature(
ee.Geometry.Point([-13.19086430168578, 9.184622291871827]),
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ee.Feature(
ee.Geometry.Point([-13.18588612175414, 9.18394444910143]),
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ee.Feature(
ee.Geometry.Point([-13.22056171989867, 9.209701562066911]),
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ee.Feature(
ee.Geometry.Point([-13.237384534840077, 9.212921069296193]),
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ee.Feature(
ee.Geometry.Point([-13.248199201588124, 9.214276642509766]),
{
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ee.Feature(
ee.Geometry.Point([-13.283218122486561, 9.196484330379587]),
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ee.Feature(
ee.Geometry.Point([-13.279956556324452, 9.192925760551425]),
{
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ee.Feature(
ee.Geometry.Point([-13.289912916187733, 9.193264673504942]),
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ee.Feature(
ee.Geometry.Point([-13.295062757496327, 9.194620322074341]),
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ee.Feature(
ee.Geometry.Point([-13.281844831470936, 9.176149164076689]),
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ee.Feature(
ee.Geometry.Point([-13.282703138355702, 9.17309878850916]),
{
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NonMangrove =
# shown: False #
ee.FeatureCollection(
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ee.Geometry.Point([-13.640199652454818, 9.89526389438857]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.6336765201306, 9.895940324341653]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.628011694691146, 9.892558160646315]),
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ee.Feature(
ee.Geometry.Point([-13.628011694691146, 9.890528845715746]),
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ee.Feature(
ee.Geometry.Point([-13.6281833560681, 9.888161295791257]),
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ee.Feature(
ee.Geometry.Point([-13.63539313390013, 9.882918803133371]),
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ee.Feature(
ee.Geometry.Point([-13.6336765201306, 9.879198273770779]),
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ee.Feature(
ee.Geometry.Point([-13.63264655186888, 9.877337993310382]),
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ee.Feature(
ee.Geometry.Point([-13.629041662952865, 9.880043852321075]),
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ee.Feature(
ee.Geometry.Point([-13.62543677403685, 9.883426144785675]),
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ee.Feature(
ee.Geometry.Point([-13.631273260853256, 9.88934507288544]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.638483038685287, 9.886301066029677]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.620458594105209, 9.88122765863999]),
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ee.Feature(
ee.Geometry.Point([-13.620286932728256, 9.878352693047196]),
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ee.Feature(
ee.Geometry.Point([-13.618226996204818, 9.884779052031762]),
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ee.Feature(
ee.Geometry.Point([-13.612390509388412, 9.881058543712408]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.609472265980209, 9.882580574930365]),
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ee.Feature(
ee.Geometry.Point([-13.614107123157943, 9.8912052854185]),
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ee.Feature(
ee.Geometry.Point([-13.594366064808334, 9.865499598598175]),
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ee.Feature(
ee.Geometry.Point([-13.596254339954818, 9.863639240739971]),
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ee.Feature(
ee.Geometry.Point([-13.593851080677474, 9.863300992728192]),
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ee.Feature(
ee.Geometry.Point([-13.592306128284896, 9.867359945951616]),
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ee.Feature(
ee.Geometry.Point([-13.595567694447006, 9.870742368765931]),
{
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ee.Feature(
ee.Geometry.Point([-13.59745596959349, 9.872433567144729]),
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ee.Feature(
ee.Geometry.Point([-13.59694098546263, 9.870911488994695]),
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ee.Feature(
ee.Geometry.Point([-13.487671836213329, 9.603185503942363]),
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ee.Feature(
ee.Geometry.Point([-13.488873465852, 9.602508479883612]),
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ee.Feature(
ee.Geometry.Point([-13.489045127228954, 9.599969627609893]),
{
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ee.Feature(
ee.Geometry.Point([-13.488701804475047, 9.597769273580928]),
{
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ee.Feature(
ee.Geometry.Point([-13.490075095490672, 9.591506649300088]),
{
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ee.Feature(
ee.Geometry.Point([-13.48389528592036, 9.598107790515527]),
{
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ee.Feature(
ee.Geometry.Point([-13.442353232697704, 9.603016248054569]),
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ee.Feature(
ee.Geometry.Point([-13.440808280305125, 9.604708803125543]),
{
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ee.Feature(
ee.Geometry.Point([-13.438233359650829, 9.60572433210698]),
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ee.Feature(
ee.Geometry.Point([-13.43445680935786, 9.602339223657433]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.43668840725825, 9.59472260595197]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.438748343781688, 9.590491077703861]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.444069846467235, 9.581689329827402]),
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ee.Feature(
ee.Geometry.Point([-13.446301444367625, 9.58050446171579]),
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ee.Feature(
ee.Geometry.Point([-13.459862693146922, 9.594384085635884]),
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ee.Feature(
ee.Geometry.Point([-13.46243761380122, 9.59472260595197]),
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ee.Feature(
ee.Geometry.Point([-13.469132407502391, 9.611817442013729]),
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ee.Feature(
ee.Geometry.Point([-13.469475730256297, 9.615033205784563]),
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ee.Feature(
ee.Geometry.Point([-13.471364005402782, 9.61621795315115]),
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ee.Feature(
ee.Geometry.Point([-13.474282248810985, 9.61621795315115]),
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ee.Feature(
ee.Geometry.Point([-13.472222312287547, 9.611817442013729]),
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ee.Feature(
ee.Geometry.Point([-13.469304068879344, 9.609447912307623]),
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ee.Feature(
ee.Geometry.Point([-13.47016237576411, 9.620787654108952]),
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ee.Feature(
ee.Geometry.Point([-13.46964739163325, 9.624511068472138]),
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ee.Feature(
ee.Geometry.Point([-13.46964739163325, 9.626372760267671]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.492478354768016, 9.624341823254763]),
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ee.Feature(
ee.Geometry.Point([-13.495568259553172, 9.62620351598291]),
{
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ee.Feature(
ee.Geometry.Point([-13.496083243684032, 9.630434597660521]),
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ee.Feature(
ee.Geometry.Point([-13.423127158478954, 9.615371705455658]),
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ee.Feature(
ee.Geometry.Point([-13.411797507600047, 9.610801931314386]),
{
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ee.Feature(
ee.Geometry.Point([-13.41248415310786, 9.606570603931203]),
{
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ee.Feature(
ee.Geometry.Point([-13.408879264191844, 9.615202455662457]),
{
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ee.Feature(
ee.Geometry.Point([-13.409050925568797, 9.621972381310744]),
{
"landcover": 2,
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ee.Feature(
ee.Geometry.Point([-13.414887412385204, 9.625865027159046]),
{
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ee.Feature(
ee.Geometry.Point([-13.419693930939891, 9.63331170291934]),
{
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ee.Feature(
ee.Geometry.Point([-13.413685782746532, 9.634665626321135]),
{
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ee.Feature(
ee.Geometry.Point([-13.403557761506297, 9.632296256804214]),
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ee.Feature(
ee.Geometry.Point([-13.405446036652782, 9.63128080763471]),
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ee.Feature(
ee.Geometry.Point([-13.40750597317622, 9.634665626321135]),
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ee.Feature(
ee.Geometry.Point([-13.409565909699657, 9.636527262130242]),
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ee.Feature(
ee.Geometry.Point([-13.431023581818797, 9.63331170291934]),
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ee.Feature(
ee.Geometry.Point([-13.532562170556368, 9.62265315892689]),
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ee.Feature(
ee.Geometry.Point([-13.534278784325899, 9.62400712505879]),
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ee.Feature(
ee.Geometry.Point([-13.531875525048555, 9.626376552734179]),
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[[[-13.435829167541891, 9.591646642167026],
[-13.433940892395407, 9.586568755869056],
[-13.431537633118063, 9.589446234106036]]]),
{
"landcover": 2,
"system:index": "502"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.438919072327048, 9.66560587720521],
[-13.439777379211813, 9.662559821578215],
[-13.435657506164938, 9.664590528393632]]]),
{
"landcover": 2,
"system:index": "503"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.52801132696572, 9.802649707720889],
[-13.531272893127829, 9.798420802628165],
[-13.525608067688376, 9.799266587959883]]]),
{
"landcover": 2,
"system:index": "504"
}),
ee.Feature(
ee.Geometry.Point([-13.700941293708981, 9.913100953593409]),
{
"landcover": 2,
"system:index": "505"
}),
ee.Feature(
ee.Geometry.Point([-13.703344552986325, 9.910057166995815]),
{
"landcover": 2,
"system:index": "506"
}),
ee.Feature(
ee.Geometry.Point([-13.707636087410153, 9.905660536482868]),
{
"landcover": 2,
"system:index": "507"
}),
ee.Feature(
ee.Geometry.Point([-13.709009378425778, 9.902109368825391]),
{
"landcover": 2,
"system:index": "508"
}),
ee.Feature(
ee.Geometry.Point([-13.710725992195309, 9.897543525381757]),
{
"landcover": 2,
"system:index": "509"
}),
ee.Feature(
ee.Geometry.Point([-13.712099283210934, 9.892977618451745]),
{
"landcover": 2,
"system:index": "510"
}),
ee.Feature(
ee.Geometry.Point([-13.713300912849606, 9.889426313632375]),
{
"landcover": 2,
"system:index": "511"
}),
ee.Feature(
ee.Geometry.Point([-13.715532510749997, 9.885198519765332]),
{
"landcover": 2,
"system:index": "512"
}),
ee.Feature(
ee.Geometry.Point([-13.717420785896481, 9.88249270315871]),
{
"landcover": 2,
"system:index": "513"
}),
ee.Feature(
ee.Geometry.Point([-13.720854013435543, 9.877926587157914]),
{
"landcover": 2,
"system:index": "514"
}),
ee.Feature(
ee.Geometry.Point([-13.724802225105465, 9.873360407791562]),
{
"landcover": 2,
"system:index": "515"
}),
ee.Feature(
ee.Geometry.Point([-13.678281991951168, 9.891962963848515]),
{
"landcover": 2,
"system:index": "516"
}),
ee.Feature(
ee.Geometry.Point([-13.626096933357418, 9.910902666107052]),
{
"landcover": 2,
"system:index": "517"
}),
ee.Feature(
ee.Geometry.Point([-13.625581949226559, 9.908873464578067]),
{
"landcover": 2,
"system:index": "518"
}),
ee.Feature(
ee.Geometry.Point([-13.625581949226559, 9.906167843010932]),
{
"landcover": 2,
"system:index": "519"
}),
ee.Feature(
ee.Geometry.Point([-13.625581949226559, 9.903462199130923]),
{
"landcover": 2,
"system:index": "520"
}),
ee.Feature(
ee.Geometry.Point([-13.626611917488278, 9.90177116037774]),
{
"landcover": 2,
"system:index": "521"
}),
ee.Feature(
ee.Geometry.Point([-13.621633737556637, 9.913946444855837]),
{
"landcover": 2,
"system:index": "522"
}),
ee.Feature(
ee.Geometry.Point([-13.621633737556637, 9.91242455901354]),
{
"landcover": 2,
"system:index": "523"
}),
ee.Feature(
ee.Geometry.Point([-13.747289865486325, 9.918850251170033]),
{
"landcover": 2,
"system:index": "524"
}),
ee.Feature(
ee.Geometry.Point([-13.748319833748043, 9.916821098835793]),
{
"landcover": 2,
"system:index": "525"
}),
ee.Feature(
ee.Geometry.Point([-13.749349802009762, 9.91360824861252]),
{
"landcover": 2,
"system:index": "526"
}),
ee.Feature(
ee.Geometry.Point([-13.751581399910153, 9.911071765667707]),
{
"landcover": 2,
"system:index": "527"
}),
ee.Feature(
ee.Geometry.Point([-13.752611368171872, 9.909888066911998]),
{
"landcover": 2,
"system:index": "528"
}),
ee.Feature(
ee.Geometry.Point([-13.759992807380856, 9.912086361200327]),
{
"landcover": 2,
"system:index": "529"
}),
ee.Feature(
ee.Geometry.Point([-13.736818521492184, 9.893146727247624]),
{
"landcover": 2,
"system:index": "530"
}),
ee.Feature(
ee.Geometry.Point([-13.731497018806637, 9.890948306111866]),
{
"landcover": 2,
"system:index": "531"
}),
ee.Feature(
ee.Geometry.Point([-13.72669050025195, 9.889595424255967]),
{
"landcover": 2,
"system:index": "532"
}),
ee.Feature(
ee.Geometry.Point([-13.719137399666012, 9.90109474243695]),
{
"landcover": 2,
"system:index": "533"
}),
ee.Feature(
ee.Geometry.Point([-13.719824045173825, 9.906675148754557]),
{
"landcover": 2,
"system:index": "534"
}),
ee.Feature(
ee.Geometry.Point([-13.723600595466793, 9.91360824861252]),
{
"landcover": 2,
"system:index": "535"
}),
ee.Feature(
ee.Geometry.Point([-13.7294370822832, 9.920033917561932]),
{
"landcover": 2,
"system:index": "536"
}),
ee.Feature(
ee.Geometry.Point([-13.730982034675778, 9.924599447866193]),
{
"landcover": 2,
"system:index": "537"
}),
ee.Feature(
ee.Geometry.Point([-13.738878458015622, 9.914453738566584]),
{
"landcover": 2,
"system:index": "538"
}),
ee.Feature(
ee.Geometry.Point([-13.744714944832028, 9.910902666107052]),
{
"landcover": 2,
"system:index": "539"
}),
ee.Feature(
ee.Geometry.Point([-13.746774881355465, 9.905660536482868]),
{
"landcover": 2,
"system:index": "540"
}),
ee.Feature(
ee.Geometry.Point([-13.747976510994137, 9.89889637450345]),
{
"landcover": 2,
"system:index": "541"
}),
ee.Feature(
ee.Geometry.Point([-13.74265500830859, 9.895006918256664]),
{
"landcover": 2,
"system:index": "542"
}),
ee.Feature(
ee.Geometry.Point([-13.741110055916012, 9.88722786760753]),
{
"landcover": 2,
"system:index": "543"
}),
ee.Feature(
ee.Geometry.Point([-13.744543283455075, 9.889595424255967]),
{
"landcover": 2,
"system:index": "544"
}),
ee.Feature(
ee.Geometry.Point([-13.774927347175778, 9.920710296437226]),
{
"landcover": 2,
"system:index": "545"
}),
ee.Feature(
ee.Geometry.Point([-13.774927347175778, 9.914115542846634]),
{
"landcover": 2,
"system:index": "546"
}),
ee.Feature(
ee.Geometry.Point([-13.775957315437497, 9.91191726216291]),
{
"landcover": 2,
"system:index": "547"
}),
ee.Feature(
ee.Geometry.Point([-13.780420511238278, 9.91293185507927]),
{
"landcover": 2,
"system:index": "548"
}),
ee.Feature(
ee.Geometry.Point([-13.783682077400387, 9.907182453713716]),
{
"landcover": 2,
"system:index": "549"
}),
ee.Feature(
ee.Geometry.Point([-13.780420511238278, 9.906844250494784]),
{
"landcover": 2,
"system:index": "550"
}),
ee.Feature(
ee.Geometry.Point([-13.775442331306637, 9.90971896674098]),
{
"landcover": 2,
"system:index": "551"
}),
ee.Feature(
ee.Geometry.Point([-13.769090860359372, 9.9147919339376]),
{
"landcover": 2,
"system:index": "552"
}),
ee.Feature(
ee.Geometry.Point([-13.764456003181637, 9.920203012411678]),
{
"landcover": 2,
"system:index": "553"
}),
ee.Feature(
ee.Geometry.Point([-13.755014627449215, 9.921555768067503]),
{
"landcover": 2,
"system:index": "554"
}),
ee.Feature(
ee.Geometry.Point([-13.747118204109372, 9.927135826088241]),
{
"landcover": 2,
"system:index": "555"
}),
ee.Feature(
ee.Geometry.Point([-13.760507791511715, 9.930348543625744]),
{
"landcover": 2,
"system:index": "556"
}),
ee.Feature(
ee.Geometry.Point([-13.794668405525387, 9.923415797972327]),
{
"landcover": 2,
"system:index": "557"
}),
ee.Feature(
ee.Geometry.Point([-13.796213357917965, 9.917497484343334]),
{
"landcover": 2,
"system:index": "558"
}),
ee.Feature(
ee.Geometry.Point([-13.794496744148434, 9.913439150360041]),
{
"landcover": 2,
"system:index": "559"
}),
ee.Feature(
ee.Geometry.Point([-13.797071664802731, 9.905998740922067]),
{
"landcover": 2,
"system:index": "560"
}),
ee.Feature(
ee.Geometry.Point([-13.801191537849606, 9.899572796973985]),
{
"landcover": 2,
"system:index": "561"
}),
ee.Feature(
ee.Geometry.Point([-13.808057992927731, 9.910057166995815]),
{
"landcover": 2,
"system:index": "562"
}),
ee.Feature(
ee.Geometry.Point([-13.799474924080075, 9.920033917561932]),
{
"landcover": 2,
"system:index": "563"
}),
ee.Feature(
ee.Geometry.Point([-13.802736490242184, 9.92493763276433]),
{
"landcover": 2,
"system:index": "564"
}),
ee.Feature(
ee.Geometry.Point([-13.804968088142575, 9.941339180848713]),
{
"landcover": 2,
"system:index": "565"
}),
ee.Feature(
ee.Geometry.Point([-13.813551156990231, 9.93846474216451]),
{
"landcover": 2,
"system:index": "566"
}),
ee.Feature(
ee.Geometry.Point([-13.817842691414059, 9.930517633148913]),
{
"landcover": 2,
"system:index": "567"
}),
ee.Feature(
ee.Geometry.Point([-13.827627389900387, 9.920203012411678]),
{
"landcover": 2,
"system:index": "568"
}),
ee.Feature(
ee.Geometry.Point([-13.823679178230465, 9.912762756477909]),
{
"landcover": 2,
"system:index": "569"
}),
ee.Feature(
ee.Geometry.Point([-13.820932596199215, 9.90904256518501]),
{
"landcover": 2,
"system:index": "570"
}),
ee.Feature(
ee.Geometry.Point([-13.822992532722653, 9.904138612192435]),
{
"landcover": 2,
"system:index": "571"
}),
ee.Feature(
ee.Geometry.Point([-13.821619241707028, 9.900249218050838]),
{
"landcover": 2,
"system:index": "572"
}),
ee.Feature(
ee.Geometry.Point([-13.825395791999997, 9.892470291541834]),
{
"landcover": 2,
"system:index": "573"
}),
ee.Feature(
ee.Geometry.Point([-13.828657358162106, 9.887904314104395]),
{
"landcover": 2,
"system:index": "574"
}),
ee.Feature(
ee.Geometry.Point([-13.835867135994137, 9.886213195252276]),
{
"landcover": 2,
"system:index": "575"
}),
ee.Feature(
ee.Geometry.Point([-13.842218606941403, 9.894330486381278]),
{
"landcover": 2,
"system:index": "576"
}),
ee.Feature(
ee.Geometry.Point([-13.846510141365231, 9.901263847052817]),
{
"landcover": 2,
"system:index": "577"
}),
ee.Feature(
ee.Geometry.Point([-13.751238077156247, 9.897205312230422]),
{
"landcover": 2,
"system:index": "578"
}),
ee.Feature(
ee.Geometry.Point([-13.751924722664059, 9.893484944578221]),
{
"landcover": 2,
"system:index": "579"
}),
ee.Feature(
ee.Geometry.Point([-13.751753061287106, 9.890102755604609]),
{
"landcover": 2,
"system:index": "580"
}),
ee.Feature(
ee.Geometry.Point([-13.749864786140622, 9.88773520261068]),
{
"landcover": 2,
"system:index": "581"
}),
ee.Feature(
ee.Geometry.Point([-13.744199960701168, 9.885705857900248]),
{
"landcover": 2,
"system:index": "582"
}),
ee.Feature(
ee.Geometry.Point([-13.743684976570309, 9.88249270315871]),
{
"landcover": 2,
"system:index": "583"
}),
ee.Feature(
ee.Geometry.Point([-13.744886606208981, 9.878264820146166]),
{
"landcover": 2,
"system:index": "584"
}),
ee.Feature(
ee.Geometry.Point([-13.735960214607418, 9.875220710736242]),
{
"landcover": 2,
"system:index": "585"
}),
ee.Feature(
ee.Geometry.Point([-13.732698648445309, 9.874036882806081]),
{
"landcover": 2,
"system:index": "586"
}),
ee.Feature(
ee.Geometry.Point([-13.755529611580075, 9.876742768961105]),
{
"landcover": 2,
"system:index": "587"
}),
ee.Feature(
ee.Geometry.Point([-13.761537759773434, 9.874036882806081]),
{
"landcover": 2,
"system:index": "588"
}),
ee.Feature(
ee.Geometry.Point([-13.765657632820309, 9.870147132490299]),
{
"landcover": 2,
"system:index": "589"
}),
ee.Feature(
ee.Geometry.Point([-13.772352426521481, 9.873191288820733]),
{
"landcover": 2,
"system:index": "590"
}),
ee.Feature(
ee.Geometry.Point([-13.78162214087695, 9.888242536830802]),
{
"landcover": 2,
"system:index": "591"
}),
ee.Feature(
ee.Geometry.Point([-13.783510416023434, 9.892301182397773]),
{
"landcover": 2,
"system:index": "592"
}),
ee.Feature(
ee.Geometry.Point([-13.788316934578122, 9.891793854443343]),
{
"landcover": 2,
"system:index": "593"
}),
ee.Feature(
ee.Geometry.Point([-13.810804574958981, 9.88164713090347]),
{
"landcover": 2,
"system:index": "594"
}),
ee.Feature(
ee.Geometry.Point([-13.826940744392575, 9.862367494036468]),
{
"landcover": 2,
"system:index": "595"
}),
ee.Feature(
ee.Geometry.Point([-13.801019876472653, 9.868625043771626]),
{
"landcover": 2,
"system:index": "596"
}),
ee.Feature(
ee.Geometry.Point([-13.879640787117184, 9.97025124536242]),
{
"landcover": 2,
"system:index": "597"
}),
ee.Feature(
ee.Geometry.Point([-13.870714395515622, 9.973294471519242]),
{
"landcover": 2,
"system:index": "598"
}),
ee.Feature(
ee.Geometry.Point([-13.934229104988278, 10.045140145886094]),
{
"landcover": 2,
"system:index": "599"
}),
ee.Feature(
ee.Geometry.Point([-13.930795877449215, 10.051225165678396]),
{
"landcover": 2,
"system:index": "600"
}),
ee.Feature(
ee.Geometry.Point([-13.933714120857418, 10.054436657725878]),
{
"landcover": 2,
"system:index": "601"
}),
ee.Feature(
ee.Geometry.Point([-13.940065591804684, 10.05494373250028]),
{
"landcover": 2,
"system:index": "602"
}),
ee.Feature(
ee.Geometry.Point([-13.941267221443356, 10.052746402731378]),
{
"landcover": 2,
"system:index": "603"
}),
ee.Feature(
ee.Geometry.Point([-13.940752237312497, 10.051056138897241]),
{
"landcover": 2,
"system:index": "604"
})]),
MangroveTraining =
# shown: False #
# displayProperties: [
{
"type": "rectangle"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
}
] #
ee.FeatureCollection(
[ee.Feature(
ee.Geometry.Polygon(
[[[-14.772867907259272, 10.831865509758982],
[-14.772867907259272, 10.829800117522154],
[-14.769735087129877, 10.829800117522154],
[-14.769735087129877, 10.831865509758982]]], None, False),
{
"landcover": 1,
"system:index": "0"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.765529383394526, 10.838525248913346],
[-14.766130198213862, 10.835743350576333],
[-14.763641108248041, 10.837724402042513]]]),
{
"landcover": 1,
"system:index": "1"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.913246520634662, 10.88669795665154],
[-14.913589843388568, 10.88475937330651],
[-14.911658652897845, 10.886192240473294]]]),
{
"landcover": 1,
"system:index": "2"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.895136245366107, 10.88551795090026],
[-14.89530790674306, 10.884000793781476],
[-14.893848785038958, 10.884464370387377]]]),
{
"landcover": 1,
"system:index": "3"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-15.050952041676988, 10.935378624515092],
[-15.051295364430894, 10.933018994799562],
[-15.048548782399644, 10.934030266976446]]]),
{
"landcover": 1,
"system:index": "4"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-15.056273544362535, 10.927794033632864],
[-15.05738934331273, 10.924675867811173],
[-15.052840316823472, 10.926361366917918]]]),
{
"landcover": 1,
"system:index": "5"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-15.033013427785386, 10.937738235455122],
[-15.033270919850816, 10.934198812004023],
[-15.030266845754136, 10.93613707293644]]]),
{
"landcover": 1,
"system:index": "6"
}),
ee.Feature(
ee.Geometry.Polygon(
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NonMangroveTraining =
# shown: False #
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nationalborder = ee.FeatureCollection("projects/gee-book/assets/A3-3/Border5km")
#**** End of imports. If edited, may not auto-convert in the playground. ****#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Chapter: A3.3 Mangroves
# Section: Supplemental (Assignment 1)
# Author: Celio de Sousa, David Lagomasino, and Lola Fatoyinbo
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#****************************************
#STEP 1 - TEMPORAL AND SPATIAL PARAMETERS
#****************************************
#Temporal
year = 2020; # Year
startDay = (year)+'-01-01'; # beginning of date filter | month-day
endDay = (year)+'-12-30'; # end of date filter | month-day
#Spatial
aoi = ee.FeatureCollection('projects/gee-book/assets/A3-3/CoastalPrefectures5k')
#****************************
#STEP 2 - AUXILIARY FUNCTIONS
#****************************
def maskL8sr (image):
cloudShadowBitMask = 1 << 3
cloudsBitMask = 1 << 5
qa = image.select('pixel_qa')
mask = qa.bitwiseAnd(cloudShadowBitMask).eq(0) \
.And(qa.bitwiseAnd(cloudsBitMask).eq(0))
return image.updateMask(mask).divide(10000) \
.select("B[0-9]*") \
.copyProperties(image, ["system:time_start"])
def addIndicesL8(img):
# NDVI (Normalized Difference Vegetation Index)
ndvi = img.normalizedDifference(['B5','B4']).rename('NDVI')
# NDMI (Normalized Difference Mangrove Index - Shi et al 2016 )
ndmi = img.normalizedDifference(['B7','B3']).rename('NDMI')
# MNDWI (Modified Normalized Difference Water Index - Hanqiu Xu, 2006)
mndwi = img.normalizedDifference(['B3','B6']).rename('MNDWI')
# SR (Simple Ratio)
sr = img.select('B5').divide(img.select('B4')).rename('SR')
# Band Ratio 6/5
ratio65 = img.select('B6').divide(img.select('B5')).rename('R65')
# Band Ratio 4/6
ratio46 = img.select('B4').divide(img.select('B6')).rename('R46')
# GCVI (Green Chlorophyll Vegetation Index)
gcvi = img.expression('(NIR/GREEN)-1',{
'NIR':img.select('B5'),
'GREEN':img.select('B3')
}).rename('GCVI')
return img \
.addBands(ndvi) \
.addBands(ndmi) \
.addBands(mndwi) \
.addBands(sr) \
.addBands(ratio65) \
.addBands(ratio46) \
.addBands(gcvi)
#**************************************************************
#STEP 3 - CREATE AUXILIARY MASKS AND BANDS FOR MANGROVE MAPPING
#**************************************************************
# WATER MASK
# The objective of this mask is to remove water pixels from the Landsat composite as we are only focusing on Mangroves
# We will create a Water Mask using the Global Surface Water dataset
globalwater = ee.Image('JRC/GSW1_0/GlobalSurfaceWater'); # Load the dataset
# The Global Water Dataset has different bands. One of them is the the frequency with which water was present (occurrence).
# Esentially, this band shows how many times a given pixel was classified as water relative to the total time span of the dataset
occurrence = globalwater.select('occurrence'); # Select the occurrence band.
# Masks are composed by zeros and non-zero values. When you set or apply a mask to an image, the output image will keep it's original values where the mask
# has non zero values whereas the it will be masked where the mask has zero values.
# For this example, we want to create a watermask. Thus Watermask has to have zero where there is water and non zero values
# For our mask, we want to make sure we are selecting permanent water. We want to filter the dataset for water pixels that occurred more than 50% of the time over the 35 years time spam.
waterMask = occurrence.lt(50) # Selects lower than 50%. Automatically, values above 90% are set to 0 \
.unmask(1);
Map.addLayer(waterMask, {}, 'Water Mask')
# ELEVATION/SLOPE MASK
# The objective of this mask is to remove pixels that are unlikely to be mangrove based on the slope. Generally, it will occur near shore where
# elevation and slope is very low.
# We will create a mask using the SRTM Elevation Data
srtm = ee.Image('USGS/SRTMGL1_003')
elevation = srtm.select('elevation')
# In this case, we want to create a mask where pixels that have higher altitude values are removed
# Hence, we select everything that is UNDER 25 meters; everything else will be set to 0 automatically.
elevMask = elevation.lte(25)
Map.addLayer(elevMask, {}, 'Elevation Mask')
Map.addLayer(ee.Image().paint(aoi, 0, 2), {'palette':['red']}, 'StudyArea')
#*********************************************************
#STEP 4 - LANDSAT 8 IMAGE COLLECTION AND CLOUD-FREE MOSAIC
#*********************************************************
# Map the function over one year of data.
collection = ee.ImageCollection('LANDSAT/LC08/C01/T1_SR') \
.filterDate(startDay, endDay) \
.map(maskL8sr) \
.map(addIndicesL8)
composite = collection \
.median() \
.mask(waterMask) \
.updateMask(elevMask) \
.clip(aoi)
# Display the results.
#Map.centerObject(Mangroves2016,9)
Map.addLayer(composite, {'bands': ['B5', 'B6', 'B4'], 'min': 0, 'max': 0.3}, 'Composite')
#************************************************************
#STEP 5 - CREATE STRATIFICATION MAP BASED ON MANGROVE DATASET
#************************************************************
#Mangrove Strata
#First, let's load the global mangrove dataset for the year 2000
dataset = ee.FeatureCollection('projects/gee-book/assets/A3-3/Mangroves2000')
mangrove = ee.Image(1).clip(dataset)
#All other classes Strata
# First we create an image of zeros where values 1 will be added where there is a pixel from the composite, including the mangrove areas
nonmangrove = ee.Image(0).where(composite.select('B1'),2).selfMask()
# Now we have an image of values of 1 where there is composite. Now we set this image to zero where there is pixel of mangrove
strata = nonmangrove.where(mangrove,1).rename('landcover')
Map.addLayer (strata, {'palette':['#B3E283', '#E8E46E'], 'min':1, 'max':2}, 'Strata')
# Selecting samples based on the strata created above
stratified = strata.addBands(ee.Image.pixelLonLat()).stratifiedSample({
'numPoints': 1,
'classBand': 'landcover',
'scale': 30,
'region': aoi,
'classValues':[1,2], #
'classPoints':[1000,1000] # Insert the number of points per class.
def func_wep(f) # set these points to geometry and get their coordinates:
return f.setGeometry(ee.Geometry.Point([f.get('longitude'), f.get('latitude')]))
}).map(func_wep)
paletteSamples = ee.List([
'FFFFFF', #NULL
'01937C', # Mangrove
'B6C867', # Non-Mangrove
])
# We use this function to colorize the samples based on the palette
def func_jzm(f):
landcover = f.get('landcover')
return ee.Feature(ee.Geometry.Point([f.get('longitude'), f.get('latitude')]), f.toDictionary()) \
.set({style: {color: paletteSamples.get(landcover) }})
features = stratified.map(func_jzm)
# Add the features / sample location into the map with the style set above
Map.addLayer(features.style(**{'styleProperty': "style"}),{}, 'Samples/Location')
#************************************************************
#STEP 6 - CLASSIFICATION
#************************************************************
# First, we will select the predictors to assign to each sample point in the sample sets
bands = ['B5','B6','B7','NDVI','MNDWI','SR']
# Create the sample sets
# Automatic
samplesAutomatic = composite.select(bands).sampleRegions({
'collection': stratified,
'properties': ['landcover'],
'scale': 30,
'geometries': True,
})
# Create the sample set with the samples you selected manually via geometry
manualpoints = MangroveTraining.merge(NonMangroveTraining)
samplesManual = composite.select(bands).sampleRegions({
'collection': manualpoints,
'properties': ['landcover'],
'scale': 30,
'geometries': True,
})
# Create the Ground Truth sample set that will be used to validate the land cover classification maps
groundtruth = ee.FeatureCollection('users/celiohelder/TutorialAssets/GroundTruth')
Map.addLayer(groundtruth)
samplesgroundtruth = composite.select(bands).sampleRegions({
'collection': groundtruth, # Set of geometries selected in 4.1
'properties': ['landcover'], # Label from each geometry
'scale': 30,
'geometries': True,
})
# Train two classifiers: one with the samples collected automatically via stratification and one with the samples you selected manually
RandomForest1 = ee.Classifier.smileRandomForest(200,5).train({
'features': samplesAutomatic,
'classProperty': 'landcover',
'inputProperties': bands
})
RandomForest2 = ee.Classifier.smileRandomForest(200,5).train({
'features': samplesManual,
'classProperty': 'landcover',
'inputProperties': bands
})
# Classify the Landsat 8 Composite using the two classifiers to produce 2 land cover maps
classifiedrf1 = composite.select(bands) # select the predictors \
.classify(RandomForest1);
classifiedrf2 = composite.select(bands) # select the predictors \
.classify(RandomForest2);
# Color palette for the classification outputs
paletteMAP = [
'01937C', # Mangrove
'B6C867', # Non-Mangrove
]
# Add the classifications to the map editor
Map.addLayer (classifiedrf1, {'min': 1, 'max': 2, 'palette':paletteMAP}, 'Classification Automatic Samples')
Map.addLayer (classifiedrf2, {'min': 1, 'max': 2, 'palette':paletteMAP}, 'Classification Manual Samples')
validation1 = samplesgroundtruth.classify(RandomForest1)
validation2 = samplesgroundtruth.classify(RandomForest2)
testAccuracy1 = validation1.errorMatrix('landcover', 'classification')
testAccuracy2 = validation2.errorMatrix('landcover', 'classification')
kappa1 = testAccuracy1.kappa()
kappa2 = testAccuracy2.kappa()
print('Overall Accuracy Map 1: ', testAccuracy1.accuracy())
print('Overall Accuracy Map 2: ', testAccuracy2.accuracy())
print('Kappa: ', kappa1)
print('Kappa: ', kappa2)
print('Validation error matrix Map1: ', testAccuracy1)
print('Validation error matrix Map2: ', testAccuracy2)
legend = ui.Panel({
'style': {
'position': 'bottom-left', # Position in the map
'padding': '8px 15px' # Padding (border) size
}
})
def makeRow(color, name):
# Create the label that is actually the colored boxes that represent each class
colorBox = ui.Label({
'style': {
'backgroundColor': '#' + color,
# Use padding to give the label color box height and width.
'padding': '8px',
'margin': '0 0 4px 0'
}
})
# Create the label filled with the description text.
description = ui.Label({
'value': name,
'style': '{margin': '0 0 4px 6px'}
})
return ui.Panel({
'widgets': [colorBox, description],
'layout': ui.Panel.Layout.Flow('horizontal')
})
legend.add(makeRow('01937C', 'Mangrove'))
legend.add(makeRow('B6C867', 'Non-mangrove'))
#Map.add (legend)
# Add Earth Engine dataset
image = ee.Image("USGS/SRTMGL1_003")
#*** Start of imports. If edited, may not auto-convert in the playground. ***#
imageCollection = ee.ImageCollection("LANDSAT/MANGROVE_FORESTS"),
Mangrove =
# shown: False #
ee.FeatureCollection(
[ee.Feature(
ee.Geometry.Point([-13.661310159982044, 9.863979956913798]),
{
"landcover": 1,
"system:index": "0"
}),
ee.Feature(
ee.Geometry.Point([-13.662340128243763, 9.860766590107316]),
{
"landcover": 1,
"system:index": "1"
}),
ee.Feature(
ee.Geometry.Point([-13.666974985421497, 9.860428339147328]),
{
"landcover": 1,
"system:index": "2"
}),
ee.Feature(
ee.Geometry.Point([-13.671094858468372, 9.857891445884547]),
{
"landcover": 1,
"system:index": "3"
}),
ee.Feature(
ee.Geometry.Point([-13.670579874337513, 9.852310212005683]),
{
"landcover": 1,
"system:index": "4"
}),
ee.Feature(
ee.Geometry.Point([-13.671953165353138, 9.847405413374954]),
{
"landcover": 1,
"system:index": "5"
}),
ee.Feature(
ee.Geometry.Point([-13.66165348273595, 9.847236281087548]),
{
"landcover": 1,
"system:index": "6"
}),
ee.Feature(
ee.Geometry.Point([-13.661481821358997, 9.851295432063562]),
{
"landcover": 1,
"system:index": "7"
}),
ee.Feature(
ee.Geometry.Point([-13.658563577950794, 9.848251073512062]),
{
"landcover": 1,
"system:index": "8"
}),
ee.Feature(
ee.Geometry.Point([-13.659936868966419, 9.84317708019428]),
{
"landcover": 1,
"system:index": "9"
}),
ee.Feature(
ee.Geometry.Point([-13.671609842599231, 9.844361018943362]),
{
"landcover": 1,
"system:index": "10"
}),
ee.Feature(
ee.Geometry.Point([-13.680021250069935, 9.842500541860387]),
{
"landcover": 1,
"system:index": "11"
}),
ee.Feature(
ee.Geometry.Point([-13.681222879708606, 9.84520668687933]),
{
"landcover": 1,
"system:index": "12"
}),
ee.Feature(
ee.Geometry.Point([-13.686201059640247, 9.847067148713466]),
{
"landcover": 1,
"system:index": "13"
}),
ee.Feature(
ee.Geometry.Point([-13.690149271310169, 9.849096731482412]),
{
"landcover": 1,
"system:index": "14"
}),
ee.Feature(
ee.Geometry.Point([-13.690492594064075, 9.851802822424787]),
{
"landcover": 1,
"system:index": "15"
}),
ee.Feature(
ee.Geometry.Point([-13.684999430001575, 9.854508891171829]),
{
"landcover": 1,
"system:index": "16"
}),
ee.Feature(
ee.Geometry.Point([-13.682767832101185, 9.864318204228617]),
{
"landcover": 1,
"system:index": "17"
}),
ee.Feature(
ee.Geometry.Point([-13.68139454108556, 9.870237476020813]),
{
"landcover": 1,
"system:index": "18"
}),
ee.Feature(
ee.Geometry.Point([-13.677789652169544, 9.864149080614622]),
{
"landcover": 1,
"system:index": "19"
}),
ee.Feature(
ee.Geometry.Point([-13.67864795905431, 9.861950465733774]),
{
"landcover": 1,
"system:index": "20"
}),
ee.Feature(
ee.Geometry.Point([-13.651010477364856, 9.872943393406452]),
{
"landcover": 1,
"system:index": "21"
}),
ee.Feature(
ee.Geometry.Point([-13.655130350411731, 9.876833110681515]),
{
"landcover": 1,
"system:index": "22"
}),
ee.Feature(
ee.Geometry.Point([-13.654443704903919, 9.884950633398141]),
{
"landcover": 1,
"system:index": "23"
}),
ee.Feature(
ee.Geometry.Point([-13.648950540841419, 9.880553666792991]),
{
"landcover": 1,
"system:index": "24"
}),
ee.Feature(
ee.Geometry.Point([-13.646375620187122, 9.87564928855102]),
{
"landcover": 1,
"system:index": "25"
}),
ee.Feature(
ee.Geometry.Point([-13.638822519601185, 9.871083077592651]),
{
"landcover": 1,
"system:index": "26"
}),
ee.Feature(
ee.Geometry.Point([-13.63744922858556, 9.868038901772325]),
{
"landcover": 1,
"system:index": "27"
}),
ee.Feature(
ee.Geometry.Point([-13.633157694161731, 9.86753153639998]),
{
"landcover": 1,
"system:index": "28"
}),
ee.Feature(
ee.Geometry.Point([-13.633501016915638, 9.864149080614622]),
{
"landcover": 1,
"system:index": "29"
}),
ee.Feature(
ee.Geometry.Point([-13.63470264655431, 9.860428339147328]),
{
"landcover": 1,
"system:index": "30"
}),
ee.Feature(
ee.Geometry.Point([-13.626806223214466, 9.862288715131701]),
{
"landcover": 1,
"system:index": "31"
}),
ee.Feature(
ee.Geometry.Point([-13.630239450753528, 9.866685925709453]),
{
"landcover": 1,
"system:index": "32"
}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.868038901772325]),
{
"landcover": 1,
"system:index": "33"
}),
ee.Feature(
ee.Geometry.Point([-13.621828043282825, 9.867024170246147]),
{
"landcover": 1,
"system:index": "34"
}),
ee.Feature(
ee.Geometry.Point([-13.616678201974231, 9.865163820996548]),
{
"landcover": 1,
"system:index": "35"
}),
ee.Feature(
ee.Geometry.Point([-13.623029672921497, 9.862457839700498]),
{
"landcover": 1,
"system:index": "36"
}),
ee.Feature(
ee.Geometry.Point([-13.6204547522672, 9.865163820996548]),
{
"landcover": 1,
"system:index": "37"
}),
ee.Feature(
ee.Geometry.Point([-13.618394815743763, 9.862119590476139]),
{
"landcover": 1,
"system:index": "38"
}),
ee.Feature(
ee.Geometry.Point([-13.627321207345325, 9.861273965896487]),
{
"landcover": 1,
"system:index": "39"
}),
ee.Feature(
ee.Geometry.Point([-13.630754434884388, 9.858567952663368]),
{
"landcover": 1,
"system:index": "40"
}),
ee.Feature(
ee.Geometry.Point([-13.632814371407825, 9.854508891171829]),
{
"landcover": 1,
"system:index": "41"
}),
ee.Feature(
ee.Geometry.Point([-13.630067789376575, 9.865163820996548]),
{
"landcover": 1,
"system:index": "42"
}),
ee.Feature(
ee.Geometry.Point([-13.637792551339466, 9.866685925709453]),
{
"landcover": 1,
"system:index": "43"
}),
ee.Feature(
ee.Geometry.Point([-13.645002329171497, 9.8715904374934]),
{
"landcover": 1,
"system:index": "44"
}),
ee.Feature(
ee.Geometry.Point([-13.649637186349231, 9.872436035590608]),
{
"landcover": 1,
"system:index": "45"
}),
ee.Feature(
ee.Geometry.Point([-13.654100382150013, 9.873281631515944]),
{
"landcover": 1,
"system:index": "46"
}),
ee.Feature(
ee.Geometry.Point([-13.65289875251134, 9.879200742165947]),
{
"landcover": 1,
"system:index": "47"
}),
ee.Feature(
ee.Geometry.Point([-13.653242075265247, 9.882921271500603]),
{
"landcover": 1,
"system:index": "48"
}),
ee.Feature(
ee.Geometry.Point([-13.657876932442981, 9.882921271500603]),
{
"landcover": 1,
"system:index": "49"
}),
ee.Feature(
ee.Geometry.Point([-13.648778879464466, 9.886134422054315]),
{
"landcover": 1,
"system:index": "50"
}),
ee.Feature(
ee.Geometry.Point([-13.642255747140247, 9.880046320709882]),
{
"landcover": 1,
"system:index": "51"
}),
ee.Feature(
ee.Geometry.Point([-13.6424274085172, 9.877171344793748]),
{
"landcover": 1,
"system:index": "52"
}),
ee.Feature(
ee.Geometry.Point([-13.644830667794544, 9.88089189708034]),
{
"landcover": 1,
"system:index": "53"
}),
ee.Feature(
ee.Geometry.Point([-13.646032297433216, 9.884443294097883]),
{
"landcover": 1,
"system:index": "54"
}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.876325758861322]),
{
"landcover": 1,
"system:index": "55"
}),
ee.Feature(
ee.Geometry.Point([-13.625261270821888, 9.873281631515944]),
{
"landcover": 1,
"system:index": "56"
}),
ee.Feature(
ee.Geometry.Point([-13.618738138497669, 9.871928676992896]),
{
"landcover": 1,
"system:index": "57"
}),
ee.Feature(
ee.Geometry.Point([-13.616678201974231, 9.873281631515944]),
{
"landcover": 1,
"system:index": "58"
}),
ee.Feature(
ee.Geometry.Point([-13.613244974435169, 9.860766590107316]),
{
"landcover": 1,
"system:index": "59"
}),
ee.Feature(
ee.Geometry.Point([-13.61822315436681, 9.858906205532225]),
{
"landcover": 1,
"system:index": "60"
}),
ee.Feature(
ee.Geometry.Point([-13.621656381905872, 9.854339762525496]),
{
"landcover": 1,
"system:index": "61"
}),
ee.Feature(
ee.Geometry.Point([-13.62096973639806, 9.851464562270667]),
{
"landcover": 1,
"system:index": "62"
}),
ee.Feature(
ee.Geometry.Point([-13.618909799874622, 9.849773256298489]),
{
"landcover": 1,
"system:index": "63"
}),
ee.Feature(
ee.Geometry.Point([-13.614618265450794, 9.848420205279472]),
{
"landcover": 1,
"system:index": "64"
}),
ee.Feature(
ee.Geometry.Point([-13.609811746896106, 9.848420205279472]),
{
"landcover": 1,
"system:index": "65"
}),
ee.Feature(
ee.Geometry.Point([-13.603288614571888, 9.85044977972763]),
{
"landcover": 1,
"system:index": "66"
}),
ee.Feature(
ee.Geometry.Point([-13.602945291817981, 9.853155859573075]),
{
"landcover": 1,
"system:index": "67"
}),
ee.Feature(
ee.Geometry.Point([-13.609296762765247, 9.855185404889882]),
{
"landcover": 1,
"system:index": "68"
}),
ee.Feature(
ee.Geometry.Point([-13.614789926827747, 9.855185404889882]),
{
"landcover": 1,
"system:index": "69"
}),
ee.Feature(
ee.Geometry.Point([-13.613073313058216, 9.85501627659046]),
{
"landcover": 1,
"system:index": "70"
}),
ee.Feature(
ee.Geometry.Point([-13.605005228341419, 9.859075331836523]),
{
"landcover": 1,
"system:index": "71"
}),
ee.Feature(
ee.Geometry.Point([-13.6039752600797, 9.8631343371077]),
{
"landcover": 1,
"system:index": "72"
}),
ee.Feature(
ee.Geometry.Point([-13.602601969064075, 9.86059746467071]),
{
"landcover": 1,
"system:index": "73"
}),
ee.Feature(
ee.Geometry.Point([-13.598310434640247, 9.858398826098787]),
{
"landcover": 1,
"system:index": "74"
}),
ee.Feature(
ee.Geometry.Point([-13.594533884347278, 9.856200172865066]),
{
"landcover": 1,
"system:index": "75"
}),
ee.Feature(
ee.Geometry.Point([-13.592817270577747, 9.852479341692579]),
{
"landcover": 1,
"system:index": "76"
}),
ee.Feature(
ee.Geometry.Point([-13.594190561593372, 9.848589336960218]),
{
"landcover": 1,
"system:index": "77"
}),
ee.Feature(
ee.Geometry.Point([-13.597108805001575, 9.84520668687933]),
{
"landcover": 1,
"system:index": "78"
}),
ee.Feature(
ee.Geometry.Point([-13.598653757394153, 9.841824002140536]),
{
"landcover": 1,
"system:index": "79"
}),
ee.Feature(
ee.Geometry.Point([-13.603288614571888, 9.840809189962322]),
{
"landcover": 1,
"system:index": "80"
}),
ee.Feature(
ee.Geometry.Point([-13.605691873849231, 9.84317708019428]),
{
"landcover": 1,
"system:index": "81"
}),
ee.Feature(
ee.Geometry.Point([-13.597108805001575, 9.840978325541894]),
{
"landcover": 1,
"system:index": "82"
}),
ee.Feature(
ee.Geometry.Point([-13.592302286446888, 9.845037553465422]),
{
"landcover": 1,
"system:index": "83"
}),
ee.Feature(
ee.Geometry.Point([-13.590585672677356, 9.851633692391072]),
{
"landcover": 1,
"system:index": "84"
}),
ee.Feature(
ee.Geometry.Point([-13.589899027169544, 9.856707555681723]),
{
"landcover": 1,
"system:index": "85"
}),
ee.Feature(
ee.Geometry.Point([-13.58474918586095, 9.85653842816291]),
{
"landcover": 1,
"system:index": "86"
}),
ee.Feature(
ee.Geometry.Point([-13.618394815743763, 9.84351534884146]),
{
"landcover": 1,
"system:index": "87"
}),
ee.Feature(
ee.Geometry.Point([-13.618738138497669, 9.841147461034842]),
{
"landcover": 1,
"system:index": "88"
}),
ee.Feature(
ee.Geometry.Point([-13.622343027413685, 9.839117829403516]),
{
"landcover": 1,
"system:index": "89"
}),
ee.Feature(
ee.Geometry.Point([-13.623544657052356, 9.843853617142127]),
{
"landcover": 1,
"system:index": "90"
}),
ee.Feature(
ee.Geometry.Point([-13.625776254952747, 9.846559751071275]),
{
"landcover": 1,
"system:index": "91"
}),
ee.Feature(
ee.Geometry.Point([-13.628351175607044, 9.850788040922096]),
{
"landcover": 1,
"system:index": "92"
}),
ee.Feature(
ee.Geometry.Point([-13.629381143868763, 9.853663247072985]),
{
"landcover": 1,
"system:index": "93"
}),
ee.Feature(
ee.Geometry.Point([-13.628007852853138, 9.857722318972954]),
{
"landcover": 1,
"system:index": "94"
}),
ee.Feature(
ee.Geometry.Point([-13.630754434884388, 9.852648471292772]),
{
"landcover": 1,
"system:index": "95"
}),
ee.Feature(
ee.Geometry.Point([-13.631784403146106, 9.848251073512062]),
{
"landcover": 1,
"system:index": "96"
}),
ee.Feature(
ee.Geometry.Point([-13.635389292062122, 9.851802822424787]),
{
"landcover": 1,
"system:index": "97"
}),
ee.Feature(
ee.Geometry.Point([-13.621656381905872, 9.862119590476139]),
{
"landcover": 1,
"system:index": "98"
}),
ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.447154737476795, 9.522532872976543]),
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ee.Feature(
ee.Geometry.Point([-13.445953107838124, 9.529473937981358]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.454364515308827, 9.491719614665294]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.530582166676014, 9.523379351872673]),
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ee.Feature(
ee.Geometry.Point([-13.54568836784789, 9.526765246475557]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.337978101734608, 9.505772159084684]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.29025623894164, 9.206820925471753]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.305877424244374, 9.201398487027035]),
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ee.Feature(
ee.Geometry.Point([-13.22382328606078, 9.209871010547175]),
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ee.Feature(
ee.Geometry.Point([-13.192065931324452, 9.215632210520651]),
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ee.Feature(
ee.Geometry.Point([-13.190177656177967, 9.218851663690847]),
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ee.Feature(
ee.Geometry.Point([-13.187774396900624, 9.212751622278716]),
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ee.Feature(
ee.Geometry.Point([-13.206313825611561, 9.193095217068748]),
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ee.Feature(
ee.Geometry.Point([-13.19034931755492, 9.189536613174072]),
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ee.Feature(
ee.Geometry.Point([-13.19086430168578, 9.184622291871827]),
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ee.Feature(
ee.Geometry.Point([-13.18588612175414, 9.18394444910143]),
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ee.Feature(
ee.Geometry.Point([-13.22056171989867, 9.209701562066911]),
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ee.Feature(
ee.Geometry.Point([-13.237384534840077, 9.212921069296193]),
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ee.Feature(
ee.Geometry.Point([-13.248199201588124, 9.214276642509766]),
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ee.Feature(
ee.Geometry.Point([-13.283218122486561, 9.196484330379587]),
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ee.Feature(
ee.Geometry.Point([-13.279956556324452, 9.192925760551425]),
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ee.Feature(
ee.Geometry.Point([-13.289912916187733, 9.193264673504942]),
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ee.Feature(
ee.Geometry.Point([-13.295062757496327, 9.194620322074341]),
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ee.Feature(
ee.Geometry.Point([-13.281844831470936, 9.176149164076689]),
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ee.Feature(
ee.Geometry.Point([-13.282703138355702, 9.17309878850916]),
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NonMangrove =
# shown: False #
ee.FeatureCollection(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.6336765201306, 9.879198273770779]),
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ee.Feature(
ee.Geometry.Point([-13.63264655186888, 9.877337993310382]),
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ee.Feature(
ee.Geometry.Point([-13.629041662952865, 9.880043852321075]),
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ee.Feature(
ee.Geometry.Point([-13.62543677403685, 9.883426144785675]),
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ee.Feature(
ee.Geometry.Point([-13.631273260853256, 9.88934507288544]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.638483038685287, 9.886301066029677]),
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.594366064808334, 9.865499598598175]),
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ee.Feature(
ee.Geometry.Point([-13.596254339954818, 9.863639240739971]),
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ee.Feature(
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ee.Feature(
ee.Geometry.Point([-13.592306128284896, 9.867359945951616]),
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ee.Feature(
ee.Geometry.Point([-13.595567694447006, 9.870742368765931]),
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ee.Feature(
ee.Geometry.Point([-13.59745596959349, 9.872433567144729]),
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ee.Feature(
ee.Geometry.Point([-13.59694098546263, 9.870911488994695]),
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ee.Feature(
ee.Geometry.Point([-13.487671836213329, 9.603185503942363]),
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ee.Feature(
ee.Geometry.Point([-13.488873465852, 9.602508479883612]),
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ee.Feature(
ee.Geometry.Point([-13.489045127228954, 9.599969627609893]),
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ee.Feature(
ee.Geometry.Point([-13.488701804475047, 9.597769273580928]),
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ee.Feature(
ee.Geometry.Point([-13.490075095490672, 9.591506649300088]),
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ee.Feature(
ee.Geometry.Point([-13.48389528592036, 9.598107790515527]),
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ee.Feature(
ee.Geometry.Point([-13.442353232697704, 9.603016248054569]),
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ee.Feature(
ee.Geometry.Point([-13.440808280305125, 9.604708803125543]),
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ee.Feature(
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ee.Geometry.Point([-13.933714120857418, 10.054436657725878]),
{
"landcover": 2,
"system:index": "601"
}),
ee.Feature(
ee.Geometry.Point([-13.940065591804684, 10.05494373250028]),
{
"landcover": 2,
"system:index": "602"
}),
ee.Feature(
ee.Geometry.Point([-13.941267221443356, 10.052746402731378]),
{
"landcover": 2,
"system:index": "603"
}),
ee.Feature(
ee.Geometry.Point([-13.940752237312497, 10.051056138897241]),
{
"landcover": 2,
"system:index": "604"
})]),
MangroveTraining =
# shown: False #
# displayProperties: [
{
"type": "rectangle"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
},
{
"type": "polygon"
}
] #
ee.FeatureCollection(
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ee.Geometry.Polygon(
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[-14.769735087129877, 10.831865509758982]]], None, False),
{
"landcover": 1,
"system:index": "0"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.765529383394526, 10.838525248913346],
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{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
"landcover": 1,
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ee.Feature(
ee.Geometry.Polygon(
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{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
[[[-14.743433698959846, 10.875987708548102],
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
[[[-14.581574563265484, 10.84536404443417],
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.555700126031079, 10.620070724737218],
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
"landcover": 1,
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}),
ee.Feature(
ee.Geometry.Polygon(
[[[-14.576993053557551, 10.460191559812422],
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{
"landcover": 1,
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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}),
ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Polygon(
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{
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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NonMangroveTraining =
# shown: False #
ee.FeatureCollection(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
ee.Geometry.Polygon(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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ee.Feature(
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"landcover": 2,
"system:index": "55"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.543580628821456, 9.823836204246815],
[-13.54323730606755, 9.822398474517083],
[-13.542035676428878, 9.822652191982112]]]),
{
"landcover": 2,
"system:index": "56"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.708849929637964, 9.918043253117057],
[-13.708849929637964, 9.916690482958893],
[-13.707304977245386, 9.917113224233205]]]),
{
"landcover": 2,
"system:index": "57"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.704386733837183, 9.911025697281337],
[-13.704644225902612, 9.909588348034493],
[-13.703356765575464, 9.910095648488015]]]),
{
"landcover": 2,
"system:index": "58"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.640357040233667, 9.89622915380466],
[-13.640700362987573, 9.894199861550709],
[-13.638983749218042, 9.894622631804186]]]),
{
"landcover": 2,
"system:index": "59"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.64160671314408, 9.893653002898159],
[-13.641563797799842, 9.893124538436428],
[-13.640962982980506, 9.893261939278268]]]),
{
"landcover": 2,
"system:index": "60"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.638013196876708, 9.880523623305505],
[-13.63797028153247, 9.879339814453012],
[-13.636983228614989, 9.87972032490587]]]),
{
"landcover": 2,
"system:index": "61"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.61247856705493, 9.877437255587456],
[-13.61273605912036, 9.876168876898934],
[-13.611620260170165, 9.876507111693881]]]),
{
"landcover": 2,
"system:index": "62"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.605569196632567, 9.87041883220746],
[-13.605526281288329, 9.86906586592114],
[-13.604152990272704, 9.869742349759118]]]),
{
"landcover": 2,
"system:index": "63"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.598144842079344, 9.869150426476896],
[-13.598316503456298, 9.867628333151876],
[-13.597114873817626, 9.867628333151876]]]),
{
"landcover": 2,
"system:index": "64"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.705663266834911, 9.8058863147593],
[-13.705234113392528, 9.803941044100654],
[-13.70420414513081, 9.8052097001726]]]),
{
"landcover": 2,
"system:index": "65"
}),
ee.Feature(
ee.Geometry.Polygon(
[[[-13.438532915038143, 9.665229624575522],
[-13.438897695464169, 9.664129661994533],
[-13.43763169280914, 9.664489265541672]]]),
{
"landcover": 2,
"system:index": "66"
})]),
nationalborder = ee.FeatureCollection("projects/gee-book/assets/A3-3/Border5km")
#**** End of imports. If edited, may not auto-convert in the playground. ****#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Chapter: A3.3 Mangroves
# Section: Supplemental (Assignment 1)
# Author: Celio de Sousa, David Lagomasino, and Lola Fatoyinbo
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
#****************************************
#STEP 1 - TEMPORAL AND SPATIAL PARAMETERS
#****************************************
#Temporal
year = 2020; # Year
startDay = (year)+'-01-01'; # beginning of date filter | month-day
endDay = (year)+'-12-30'; # end of date filter | month-day
#Spatial
aoi = ee.FeatureCollection('projects/gee-book/assets/A3-3/CoastalPrefectures5k')
#****************************
#STEP 2 - AUXILIARY FUNCTIONS
#****************************
def maskL8sr (image):
cloudShadowBitMask = 1 << 3
cloudsBitMask = 1 << 5
qa = image.select('pixel_qa')
mask = qa.bitwiseAnd(cloudShadowBitMask).eq(0) \
.And(qa.bitwiseAnd(cloudsBitMask).eq(0))
return image.updateMask(mask).divide(10000) \
.select("B[0-9]*") \
.copyProperties(image, ["system:time_start"])
def addIndicesL8(img):
# NDVI (Normalized Difference Vegetation Index)
ndvi = img.normalizedDifference(['B5','B4']).rename('NDVI')
# NDMI (Normalized Difference Mangrove Index - Shi et al 2016 )
ndmi = img.normalizedDifference(['B7','B3']).rename('NDMI')
# MNDWI (Modified Normalized Difference Water Index - Hanqiu Xu, 2006)
mndwi = img.normalizedDifference(['B3','B6']).rename('MNDWI')
# SR (Simple Ratio)
sr = img.select('B5').divide(img.select('B4')).rename('SR')
# Band Ratio 6/5
ratio65 = img.select('B6').divide(img.select('B5')).rename('R65')
# Band Ratio 4/6
ratio46 = img.select('B4').divide(img.select('B6')).rename('R46')
# GCVI (Green Chlorophyll Vegetation Index)
gcvi = img.expression('(NIR/GREEN)-1',{
'NIR':img.select('B5'),
'GREEN':img.select('B3')
}).rename('GCVI')
return img \
.addBands(ndvi) \
.addBands(ndmi) \
.addBands(mndwi) \
.addBands(sr) \
.addBands(ratio65) \
.addBands(ratio46) \
.addBands(gcvi)
#**************************************************************
#STEP 3 - CREATE AUXILIARY MASKS AND BANDS FOR MANGROVE MAPPING
#**************************************************************
# WATER MASK
# The objective of this mask is to remove water pixels from the Landsat composite as we are only focusing on Mangroves
# We will create a Water Mask using the Global Surface Water dataset
globalwater = ee.Image('JRC/GSW1_0/GlobalSurfaceWater'); # Load the dataset
# The Global Water Dataset has different bands. One of them is the the frequency with which water was present (occurrence).
# Esentially, this band shows how many times a given pixel was classified as water relative to the total time span of the dataset
occurrence = globalwater.select('occurrence'); # Select the occurrence band.
# Masks are composed by zeros and non-zero values. When you set or apply a mask to an image, the output image will keep it's original values where the mask
# has non zero values whereas the it will be masked where the mask has zero values.
# For this example, we want to create a watermask. Thus Watermask has to have zero where there is water and non zero values
# For our mask, we want to make sure we are selecting permanent water. We want to filter the dataset for water pixels that occurred more than 50% of the time over the 35 years time spam.
waterMask = occurrence.lt(50) # Selects lower than 50%. Automatically, values above 90% are set to 0 \
.unmask(1);
Map.addLayer(waterMask, {}, 'Water Mask')
# ELEVATION/SLOPE MASK
# The objective of this mask is to remove pixels that are unlikely to be mangrove based on the slope. Generally, it will occur near shore where
# elevation and slope is very low.
# We will create a mask using the SRTM Elevation Data
srtm = ee.Image('USGS/SRTMGL1_003')
elevation = srtm.select('elevation')
# In this case, we want to create a mask where pixels that have higher altitude values are removed
# Hence, we select everything that is UNDER 25 meters; everything else will be set to 0 automatically.
elevMask = elevation.lte(25)
Map.addLayer(elevMask, {}, 'Elevation Mask')
Map.addLayer(ee.Image().paint(aoi, 0, 2), {'palette':['red']}, 'StudyArea')
#*********************************************************
#STEP 4 - LANDSAT 8 IMAGE COLLECTION AND CLOUD-FREE MOSAIC
#*********************************************************
# Map the function over one year of data.
collection = ee.ImageCollection('LANDSAT/LC08/C01/T1_SR') \
.filterDate(startDay, endDay) \
.map(maskL8sr) \
.map(addIndicesL8)
composite = collection \
.median() \
.mask(waterMask) \
.updateMask(elevMask) \
.clip(aoi)
# Display the results.
#Map.centerObject(Mangroves2016,9)
Map.addLayer(composite, {'bands': ['B5', 'B6', 'B4'], 'min': 0, 'max': 0.3}, 'Composite')
#************************************************************
#STEP 5 - CREATE STRATIFICATION MAP BASED ON MANGROVE DATASET
#************************************************************
#Mangrove Strata
#First, let's load the global mangrove dataset for the year 2000
dataset = ee.FeatureCollection('projects/gee-book/assets/A3-3/Mangroves2000')
mangrove = ee.Image(1).clip(dataset)
#All other classes Strata
# First we create an image of zeros where values 1 will be added where there is a pixel from the composite, including the mangrove areas
nonmangrove = ee.Image(0).where(composite.select('B1'),2).selfMask()
# Now we have an image of values of 1 where there is composite. Now we set this image to zero where there is pixel of mangrove
strata = nonmangrove.where(mangrove,1).rename('landcover')
Map.addLayer (strata, {'palette':['#B3E283', '#E8E46E'], 'min':1, 'max':2}, 'Strata')
# Selecting samples based on the strata created above
stratified = strata.addBands(ee.Image.pixelLonLat()).stratifiedSample({
'numPoints': 1,
'classBand': 'landcover',
'scale': 30,
'region': aoi,
'classValues':[1,2], #
'classPoints':[1000,1000] # Insert the number of points per class.
def func_wep(f) # set these points to geometry and get their coordinates:
return f.setGeometry(ee.Geometry.Point([f.get('longitude'), f.get('latitude')]))
}).map(func_wep)
paletteSamples = ee.List([
'FFFFFF', #NULL
'01937C', # Mangrove
'B6C867', # Non-Mangrove
])
# We use this function to colorize the samples based on the palette
def func_jzm(f):
landcover = f.get('landcover')
return ee.Feature(ee.Geometry.Point([f.get('longitude'), f.get('latitude')]), f.toDictionary()) \
.set({style: {color: paletteSamples.get(landcover) }})
features = stratified.map(func_jzm)
# Add the features / sample location into the map with the style set above
Map.addLayer(features.style(**{'styleProperty': "style"}),{}, 'Samples/Location')
#************************************************************
#STEP 6 - CLASSIFICATION
#************************************************************
# First, we will select the predictors to assign to each sample point in the sample sets
bands = ['B5','B6','B7','NDVI','MNDWI','SR']
# Create the sample sets
# Automatic
samplesAutomatic = composite.select(bands).sampleRegions({
'collection': stratified,
'properties': ['landcover'],
'scale': 30,
'geometries': True,
})
# Create the sample set with the samples you selected manually via geometry
manualpoints = MangroveTraining.merge(NonMangroveTraining)
samplesManual = composite.select(bands).sampleRegions({
'collection': manualpoints,
'properties': ['landcover'],
'scale': 30,
'geometries': True,
})
# Create the Ground Truth sample set that will be used to validate the land cover classification maps
groundtruth = ee.FeatureCollection('users/celiohelder/TutorialAssets/GroundTruth')
Map.addLayer(groundtruth)
samplesgroundtruth = composite.select(bands).sampleRegions({
'collection': groundtruth, # Set of geometries selected in 4.1
'properties': ['landcover'], # Label from each geometry
'scale': 30,
'geometries': True,
})
# Train two classifiers: one with the samples collected automatically via stratification and one with the samples you selected manually
RandomForest1 = ee.Classifier.smileRandomForest(200,5).train({
'features': samplesAutomatic,
'classProperty': 'landcover',
'inputProperties': bands
})
RandomForest2 = ee.Classifier.smileRandomForest(200,5).train({
'features': samplesManual,
'classProperty': 'landcover',
'inputProperties': bands
})
# Classify the Landsat 8 Composite using the two classifiers to produce 2 land cover maps
classifiedrf1 = composite.select(bands) # select the predictors \
.classify(RandomForest1);
classifiedrf2 = composite.select(bands) # select the predictors \
.classify(RandomForest2);
# Color palette for the classification outputs
paletteMAP = [
'01937C', # Mangrove
'B6C867', # Non-Mangrove
]
# Add the classifications to the map editor
Map.addLayer (classifiedrf1, {'min': 1, 'max': 2, 'palette':paletteMAP}, 'Classification Automatic Samples')
Map.addLayer (classifiedrf2, {'min': 1, 'max': 2, 'palette':paletteMAP}, 'Classification Manual Samples')
validation1 = samplesgroundtruth.classify(RandomForest1)
validation2 = samplesgroundtruth.classify(RandomForest2)
testAccuracy1 = validation1.errorMatrix('landcover', 'classification')
testAccuracy2 = validation2.errorMatrix('landcover', 'classification')
kappa1 = testAccuracy1.kappa()
kappa2 = testAccuracy2.kappa()
print('Overall Accuracy Map 1: ', testAccuracy1.accuracy())
print('Overall Accuracy Map 2: ', testAccuracy2.accuracy())
print('Kappa: ', kappa1)
print('Kappa: ', kappa2)
print('Validation error matrix Map1: ', testAccuracy1)
print('Validation error matrix Map2: ', testAccuracy2)
legend = ui.Panel({
'style': {
'position': 'bottom-left', # Position in the map
'padding': '8px 15px' # Padding (border) size
}
})
def makeRow(color, name):
# Create the label that is actually the colored boxes that represent each class
colorBox = ui.Label({
'style': {
'backgroundColor': '#' + color,
# Use padding to give the label color box height and width.
'padding': '8px',
'margin': '0 0 4px 0'
}
})
# Create the label filled with the description text.
description = ui.Label({
'value': name,
'style': '{margin': '0 0 4px 6px'}
})
return ui.Panel({
'widgets': [colorBox, description],
'layout': ui.Panel.Layout.Flow('horizontal')
})
legend.add(makeRow('01937C', 'Mangrove'))
legend.add(makeRow('B6C867', 'Non-mangrove'))
#Map.add (legend)
Display the interactive map¶
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